hierarchical_build.cpp File Reference

Implements raptor::hibf::hierarchical_build. More...

#include <lemon/list_graph.h>
#include <raptor/build/hibf/compute_kmers.hpp>
#include <raptor/build/hibf/construct_ibf.hpp>
#include <raptor/build/hibf/hierarchical_build.hpp>
#include <raptor/build/hibf/initialise_max_bin_kmers.hpp>
#include <raptor/build/hibf/insert_into_ibf.hpp>
#include <raptor/build/hibf/loop_over_children.hpp>
#include <raptor/build/hibf/update_user_bins.hpp>

Include dependency graph for hierarchical_build.cpp:

Namespaces
namespace	raptor::hibf
	Must be first include.

Functions
template<seqan3::data_layout data_layout_mode>
size_t	raptor::hibf::hierarchical_build (robin_hood::unordered_flat_set< size_t > &parent_kmers, lemon::ListDigraph::Node const &current_node, build_data< data_layout_mode > &data, build_arguments const &arguments, bool is_root)
template size_t	raptor::hibf::hierarchical_build< seqan3::data_layout::compressed > (robin_hood::unordered_flat_set< size_t > &, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::compressed > &, build_arguments const &, bool)
template size_t	raptor::hibf::hierarchical_build< seqan3::data_layout::uncompressed > (robin_hood::unordered_flat_set< size_t > &, lemon::ListDigraph::Node const &, build_data< seqan3::data_layout::uncompressed > &, build_arguments const &, bool)

Detailed Description

Implements raptor::hibf::hierarchical_build.

Author

Enrico Seiler <enrico.seiler AT fu-berlin.de>