construct_ibf.hpp

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// --------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
// --------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <robin_hood.h>
 
#include <raptor/argument_parsing/build_arguments.hpp>
#include <raptor/build/hibf/build_data.hpp>
 
namespace raptor::hibf
{
 
template <seqan3::data_layout data_layout_mode>
seqan3::interleaved_bloom_filter<> construct_ibf(robin_hood::unordered_flat_set<size_t> & parent_kmers,
                                                 robin_hood::unordered_flat_set<size_t> & kmers,
                                                 size_t const number_of_bins,
                                                 lemon::ListDigraph::Node const & node,
                                                 build_data<data_layout_mode> & data,
                                                 build_arguments const & arguments,
                                                 bool is_root);
 
} // namespace raptor::hibf