compute_bin_size.cpp File Reference
Implements raptor::compute_bin_size and raptor::max_bin_count. More...
#include <seqan3/search/views/minimiser_hash.hpp>#include <raptor/adjust_seed.hpp>#include <raptor/argument_parsing/compute_bin_size.hpp>#include <raptor/build/hibf/bin_size_in_bits.hpp>#include <raptor/call_parallel_on_bins.hpp>#include <raptor/dna4_traits.hpp>#include <raptor/file_reader.hpp>
Include dependency graph for compute_bin_size.cpp:Functions | |
| size_t | raptor::compute_bin_size (raptor::build_arguments const &arguments) |
| size_t | raptor::detail::kmer_count_from_minimiser_files (std::vector< std::vector< std::string > > const &bin_path, uint8_t const threads) |
| size_t | raptor::detail::kmer_count_from_sequence_files (std::vector< std::vector< std::string > > const &bin_path, uint8_t const threads, seqan3::shape const &shape, uint32_t const window_size) |
| size_t | raptor::max_bin_count (upgrade_arguments const &arguments) |
Detailed Description
Implements raptor::compute_bin_size and raptor::max_bin_count.
