call_parallel_on_bins.hpp

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// --------------------------------------------------------------------------------------------------
// Copyright (c) 2006-2023, Knut Reinert & Freie Universität Berlin
// Copyright (c) 2016-2023, Knut Reinert & MPI für molekulare Genetik
// This file may be used, modified and/or redistributed under the terms of the 3-clause BSD-License
// shipped with this file and also available at: https://github.com/seqan/raptor/blob/main/LICENSE.md
// --------------------------------------------------------------------------------------------------
 
#pragma once
 
#include <seqan3/core/algorithm/detail/execution_handler_parallel.hpp>
#include <seqan3/utility/views/chunk.hpp>
#include <seqan3/utility/views/zip.hpp>
 
namespace raptor
{
 
template <typename algorithm_t>
void call_parallel_on_bins(algorithm_t && worker,
                           std::vector<std::vector<std::string>> const & bin_paths,
                           uint8_t const threads)
{
    // GCOVR_EXCL_START
    size_t const chunk_size = std::clamp<size_t>(std::bit_ceil(bin_paths.size() / threads), 8u, 64u);
    // GCOVR_EXCL_STOP
    auto chunked_view = seqan3::views::zip(bin_paths, std::views::iota(0u)) | seqan3::views::chunk(chunk_size);
    seqan3::detail::execution_handler_parallel executioner{threads};
    executioner.bulk_execute(std::move(worker), std::move(chunked_view), []() {});
}
 
} // namespace raptor