Raptor
3.0.0-rc.1
A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences
Here is a list of all documented class members with links to the class documentation for each member:
- b -
bin_indices_of_ibf() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
bulk_contains() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
bulk_contains_impl() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
bulk_count() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
bulk_count_impl() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
- c -
compute_fp_correction() :
raptor::hibf::build_data< data_layout_mode >
counting_agent() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
counting_agent_type() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
- d -
data_layout_mode :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
- f -
filename_index() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
filename_of_user_bin() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
forward_hashes :
raptor::threshold::forward_strand_minimiser
forward_strand_minimiser() :
raptor::threshold::forward_strand_minimiser
- h -
hibf_ptr :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
hibf_t :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
hierarchical_interleaved_bloom_filter() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
- i -
ibf_bin_to_filename_position :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
ibf_t :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
ibf_vector :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
- l -
load_old_index() :
raptor::raptor_index< data_t >
load_old_parameters() :
raptor::raptor_index< data_t >
- m -
membership_agent() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
minimiser_begin :
raptor::threshold::forward_strand_minimiser
- n -
next_ibf_id :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
num_user_bins() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
- o -
operator=() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
,
raptor::threshold::forward_strand_minimiser
operator[]() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
- r -
resize() :
raptor::threshold::forward_strand_minimiser
result_buffer :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
- s -
seed :
raptor::threshold::forward_strand_minimiser
serialize() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
,
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
,
raptor::raptor_index< data_t >
set_ibf_count() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
set_user_bin_count() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
shape :
raptor::threshold::forward_strand_minimiser
shape_size :
raptor::threshold::forward_strand_minimiser
- u -
user_bin_filenames :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
user_bins :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
- w -
window_size :
raptor::threshold::forward_strand_minimiser
write_filenames() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::user_bins
- ~ -
~counting_agent_type() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
~forward_strand_minimiser() :
raptor::threshold::forward_strand_minimiser
~hierarchical_interleaved_bloom_filter() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >
~membership_agent() :
raptor::hierarchical_interleaved_bloom_filter< data_layout_mode_ >::membership_agent
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